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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33784773_33874808_R

Intron Information:

Intron Rank:
20
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
33784773 - 33874808
Intron Length:
90036

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGGT
5'SS Class:
strong_major
3'SS Sequence:
CTCAGGGCCCCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GCTTGAT
U12 Branch Point Sequence:
TGCGGCTTGATT
Flanking Amino Acid:
TGSAVMNFAERLLLTAPSLI
Intron Amino Acid Position:
698

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.8
75
35.2
Major BPS
66.1
0.4
1.3
59.3
47.1
Major PPT
56.9
0.16
1
45.6
41.3
Minor 5ss
26.7
-2.7
3.3
38.5
46.6
Minor BPS
49.7
0.06
1.9
67.1
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015649
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016429
33784461 - 33882522
98062