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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33820550_33820788_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33820550 - 33820788
Intron Length:
239

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TGCTCCTCGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAT
U12 Branch Point Sequence:
AGCCCCCTAATT
Flanking Amino Acid:
MLETQNDLFQTPLHLAVYLE
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
72.3
37.8
Major BPS
69.6
0.49
1.1
69.5
34
Major PPT
68.7
0.42
1
61.9
39.9
Minor 5ss
39.1
-1.2
3.1
52.5
44.7
Minor BPS
55.5
0.25
1.7
69.67
41

Associated Gene:

Gene:
NFKBIE
Ensembl Gene ID:
ENSAPLG00000015410
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019372
33814413 - 33822191
7779
ENSAPLT00000016051
33814413 - 33822191
7779