About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33821571_33821693_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33821571 - 33821693
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTGAGTGCG
5'SS Class:
major
3'SS Sequence:
TTGGTCTCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
TGACACAAAAAA
Flanking Amino Acid:
AQDLADGNDDLLALLPFDDL
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.3
65.8
40.2
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
79.7
0.67
0.9
73.8
36.9
Minor 5ss
28.9
-2.4
3
31.8
35.2
Minor BPS
40.4
-0.7
2
50.53
39.4

Associated Gene:

Gene:
NFKBIE
Ensembl Gene ID:
ENSAPLG00000015410
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019372
33814413 - 33822191
7779
ENSAPLT00000016051
33814413 - 33822191
7779