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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33821756_33821979_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33821756 - 33821979
Intron Length:
224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAGCGGC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACACAT
U12 Branch Point Sequence:
TGAGCACTACAC
Flanking Amino Acid:
KISGKPVVCSELRAQQD*
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.4
0.32
1.1
51.2
40.6
Major BPS
69.9
0.49
1
75.2
29.8
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
32.5
-2
3.3
37.3
41.6
Minor BPS
38.2
-0.9
2.1
47.51
41

Associated Gene:

Gene:
NFKBIE
Ensembl Gene ID:
ENSAPLG00000015410
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016051
33814413 - 33822191
7779