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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33826947_33827055_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33826947 - 33827055
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
TTACCCCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAC
U12 Branch Point Sequence:
CTTCTCTTACCC
Flanking Amino Acid:
YFKRKNYLETGRGICFPVIK
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
75.8
33.8
Major BPS
69.2
0.48
1
61
37.1
Major PPT
76.1
0.59
0.8
66.7
35.3
Minor 5ss
29.5
-2.3
3.4
38.8
46.5
Minor BPS
61.8
0.35
1.7
71.01
40.5

Associated Gene:

Gene:
SLC35B2
Ensembl Gene ID:
ENSAPLG00000015415
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016066
33826026 - 33829706
3681