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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33827217_33828264_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33827217 - 33828264
Intron Length:
1048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGTC
5'SS Class:
strong_major
3'SS Sequence:
TCCCGCTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAG
U12 Branch Point Sequence:
GGGCCCTGAGTC
Flanking Amino Acid:
KLLFCAAGLQASYLTWGVLQ
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.9
31.6
Major BPS
47
-0.1
1.5
42.6
40.4
Major PPT
78.4
0.64
0.8
72
32.6
Minor 5ss
33.8
-1.8
3.7
49.2
47.3
Minor BPS
46.2
-0.3
1.7
50.78
39.6

Associated Gene:

Gene:
SLC35B2
Ensembl Gene ID:
ENSAPLG00000015415
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016066
33826026 - 33829706
3681