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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33874599_33874808_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33874599 - 33874808
Intron Length:
210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCTCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CCCTGCTCACCC
Flanking Amino Acid:
TGSAVMNFAEWLLLTMCG*
Intron Amino Acid Position:
698

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.8
75
35.2
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
80.7
0.69
0.7
73.2
31.7
Minor 5ss
26.7
-2.7
3.3
38.5
46.6
Minor BPS
42.8
-0.5
2.2
49.59
47.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015649
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005446
33873756 - 33882522
8767