Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33875087_33875197_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

33875087 - 33875197

Intron Length:

111

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAGGTGTG

5'SS Class:

major

3'SS Sequence:

CTCTGCCTCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAG

U12 Branch Point Sequence:

GGGTGCTGAGCG

Flanking Amino Acid:

YEMRMALESAGFKLNNKLHQ

Intron Amino Acid Position:

639

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.4

0.62

1.1

67.1

44.6

Major BPS

52.2

0.06

1.6

51.1

46.3

Major PPT

0.56

0.8

68.7

31.7

Minor 5ss

34.5

-1.8

3.5

39.9

46.1

Minor BPS

42.9

-0.6

2.1

46.01

45.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015649

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005446

33873756 - 33882522

8767

ENSAPLT00000016429

33784461 - 33882522

98062