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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33875277_33875359_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33875277 - 33875359
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCAGG
5'SS Class:
major
3'SS Sequence:
GTGCCTTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAC
U12 Branch Point Sequence:
CTGCCCTTCACC
Flanking Amino Acid:
ILWNKIRSWLTIFRQHDLDK
Intron Amino Acid Position:
613

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
61.4
44.7
Major BPS
65.1
0.38
1.1
68.9
36.5
Major PPT
78.8
0.65
0.9
72.7
37.5
Minor 5ss
33.5
-1.9
2.8
36.6
41.8
Minor BPS
59.9
0.29
1.8
67.47
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015649
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016429
33784461 - 33882522
98062
ENSAPLT00000005446
33873756 - 33882522
8767