Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33877813_33879226_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

33877813 - 33879226

Intron Length:

1414

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTGAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

TGCTCGCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCCTCAG

U12 Branch Point Sequence:

CTGGCCTCAGCC

Flanking Amino Acid:

LQLKMEDGEFWMSFRDFMRE

Intron Amino Acid Position:

328

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

0.9

71.1

32.7

Major BPS

46.3

-0.2

1.6

53.3

44.2

Major PPT

68.7

0.42

0.9

61.7

34.9

Minor 5ss

28.6

-2.4

32.8

35.9

Minor BPS

47.9

-0.1

1.9

58.23

46.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015649

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016429

33784461 - 33882522

98062

ENSAPLT00000005446

33873756 - 33882522

8767