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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33887129_33887225_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33887129 - 33887225
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGCGCT
5'SS Class:
major
3'SS Sequence:
TTATTTGCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTGGCTTTTATT
Flanking Amino Acid:
WLLFFSTVRTGFLAPTSMFT
Intron Amino Acid Position:
722

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
65.8
40.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
78.8
0.65
0.9
77.4
36.7
Minor 5ss
33.1
-1.9
3.4
39.6
45.9
Minor BPS
57.8
0.33
1.7
74.98
42.6

Associated Gene:

Gene:
TMEM63B
Ensembl Gene ID:
ENSAPLG00000016007
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037463
33884914 - 33910150
25237
ENSAPLT00000029303
33884914 - 33898623
13710
ENSAPLT00000017668
33884914 - 33910150
25237
ENSAPLT00000016737
33886213 - 33907219
21007