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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33887394_33887506_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33887394 - 33887506
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCGAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGCCAC
U12 Branch Point Sequence:
CCTCCTGCCACC
Flanking Amino Acid:
SITCPIIVPFGLMYMLLKHL
Intron Amino Acid Position:
666

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
68.5
36.9
Major BPS
46
-0.2
1.4
53.5
42
Major PPT
78.9
0.65
0.7
76.8
25.3
Minor 5ss
36.8
-1.5
3.4
46.6
43.5
Minor BPS
38.1
-0.9
2.3
47.01
42.8

Associated Gene:

Gene:
TMEM63B
Ensembl Gene ID:
ENSAPLG00000016007
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029303
33884914 - 33898623
13710
ENSAPLT00000017668
33884914 - 33910150
25237
ENSAPLT00000016737
33886213 - 33907219
21007
ENSAPLT00000037463
33884914 - 33910150
25237