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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33887613_33887742_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33887613 - 33887742
Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCCGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTGAG
U12 Branch Point Sequence:
GTTGCCCCCACA
Flanking Amino Acid:
SAAERRNVKRHQAYEFQFGA
Intron Amino Acid Position:
631

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
72.2
39.5
Major BPS
47.4
-0.1
1.5
42.8
41.8
Major PPT
72.6
0.51
0.9
69.2
31.4
Minor 5ss
28.5
-2.5
3.1
31.8
42.6
Minor BPS
44
-0.4
2.3
61.2
44.5

Associated Gene:

Gene:
TMEM63B
Ensembl Gene ID:
ENSAPLG00000016007
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017668
33884914 - 33910150
25237
ENSAPLT00000016737
33886213 - 33907219
21007
ENSAPLT00000037463
33884914 - 33910150
25237
ENSAPLT00000029303
33884914 - 33898623
13710