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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33887906_33889413_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33887906 - 33889413
Intron Length:
1508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTGTGCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGAGCAT
U12 Branch Point Sequence:
ATCTCCTGCAGC
Flanking Amino Acid:
VLLLPSLGLSRCVFLPDNGA
Intron Amino Acid Position:
542

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.2
39.9
Major BPS
42.2
-0.4
1.5
45.5
47.5
Major PPT
70.9
0.47
0.9
61.7
40
Minor 5ss
34.9
-1.7
3.5
48.2
47.9
Minor BPS
47.2
-0.2
2.2
61.28
44

Associated Gene:

Gene:
TMEM63B
Ensembl Gene ID:
ENSAPLG00000016007
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029303
33884914 - 33898623
13710