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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33890605_33890841_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33890605 - 33890841
Intron Length:
237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCAGC
5'SS Class:
major
3'SS Sequence:
TCACCCCACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TCCCCCCTCACC
Flanking Amino Acid:
SYAPDPQNIYWEHLSIRGFI
Intron Amino Acid Position:
438

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
64.9
41.1
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
63.7
0.31
0.9
54.7
35.2
Minor 5ss
34.4
-1.8
2.9
39.9
40.3
Minor BPS
47.9
-0.1
2.1
60.5
44.7

Associated Gene:

Gene:
TMEM63B
Ensembl Gene ID:
ENSAPLG00000016007
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016737
33886213 - 33907219
21007
ENSAPLT00000037463
33884914 - 33910150
25237
ENSAPLT00000029303
33884914 - 33898623
13710
ENSAPLT00000017668
33884914 - 33910150
25237