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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33890980_33891118_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33890980 - 33891118
Intron Length:
139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCACCAT
U12 Branch Point Sequence:
ACCATCTCCACT
Flanking Amino Acid:
VTFHNETITAIILKDFNACK
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
79.9
34.9
Major BPS
53
0.08
1.4
63
42.7
Major PPT
87.9
0.85
0.7
80.8
31.3
Minor 5ss
37.1
-1.5
3.2
54.8
42.5
Minor BPS
44.9
-0.3
2
58.47
44.7

Associated Gene:

Gene:
TMEM63B
Ensembl Gene ID:
ENSAPLG00000016007
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016737
33886213 - 33907219
21007
ENSAPLT00000037463
33884914 - 33910150
25237
ENSAPLT00000029303
33884914 - 33898623
13710
ENSAPLT00000017668
33884914 - 33910150
25237