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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33891727_33892364_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33891727 - 33892364
Intron Length:
638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAGTCTG
5'SS Class:
major
3'SS Sequence:
TCTCTGTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TTTTCTCTGTCT
Flanking Amino Acid:
AEPEKIKKHFEEAYANCTVL
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
62.5
43.8
Major BPS
79
0.72
1
69
38.9
Major PPT
82.3
0.73
0.8
76.6
32
Minor 5ss
33.7
-1.9
3
37.8
40.8
Minor BPS
45
-0.3
3.6
83.72
37.5

Associated Gene:

Gene:
TMEM63B
Ensembl Gene ID:
ENSAPLG00000016007
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029303
33884914 - 33898623
13710
ENSAPLT00000017668
33884914 - 33910150
25237
ENSAPLT00000016737
33886213 - 33907219
21007
ENSAPLT00000037463
33884914 - 33910150
25237