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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33893405_33893597_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33893405 - 33893597
Intron Length:
193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTAAC
U12 Branch Point Sequence:
CTCGGTGTAACC
Flanking Amino Acid:
LPVNFSGDLLENNAYSFGRT
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
33.2
Major BPS
56.8
0.17
1.4
61.4
43.2
Major PPT
80.4
0.68
0.7
72.7
32.1
Minor 5ss
24.1
-3
3.2
29.7
43.3
Minor BPS
42.3
-0.6
2.4
52.59
45.8

Associated Gene:

Gene:
TMEM63B
Ensembl Gene ID:
ENSAPLG00000016007
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037463
33884914 - 33910150
25237
ENSAPLT00000029303
33884914 - 33898623
13710
ENSAPLT00000017668
33884914 - 33910150
25237
ENSAPLT00000016737
33886213 - 33907219
21007