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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33894806_33897410_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33894806 - 33897410
Intron Length:
2605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTATGTTGT
5'SS Class:
major
3'SS Sequence:
TTTGTCATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TCTCCCCCAAAT
Flanking Amino Acid:
RWQTEREEREYVASALHSDN
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1
66.9
39.1
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
84
0.76
0.8
78.2
34.9
Minor 5ss
49.9
-0
2.4
67.9
38.2
Minor BPS
49
0.01
2
72.33
43.7

Associated Gene:

Gene:
TMEM63B
Ensembl Gene ID:
ENSAPLG00000016007
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037463
33884914 - 33910150
25237
ENSAPLT00000029303
33884914 - 33898623
13710
ENSAPLT00000016737
33886213 - 33907219
21007