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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33914906_33916495_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33914906 - 33916495
Intron Length:
1590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TCTCTCTCATTC
Flanking Amino Acid:
LRSAVSQRHFSITASCRAIQ
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
87.1
0.84
0.8
80.5
37
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
48.1
-0.1
1.8
59.33
40.3

Associated Gene:

Gene:
MRPL14
Ensembl Gene ID:
ENSAPLG00000016246
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016946
33909576 - 33916969
7394