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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33993946_34002939_R

Intron Information:

Intron Rank:
155548
Intron Class:
major
Intron Phase:
Intron Coordinates:
33993946 - 34002939
Intron Length:
8994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTCTGTGCA
5'SS Class:
major
3'SS Sequence:
AATCTCATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
CATTCCTTAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.7
0.35
1.3
60.4
38.5
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
74.4
0.55
0.9
66.5
38.5
Minor 5ss
34.6
-1.7
3
38.8
41.5
Minor BPS
75.4
0.78
1.4
77.12
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031185
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024513
33993596 - 34003653
10058