Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34113618_34154882_R

Intron Information:

Intron Rank:

143595

Intron Class:

major

Intron Phase:

Intron Coordinates:

34113618 - 34154882

Intron Length:

41265

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTAAGGCAC

5'SS Class:

major

3'SS Sequence:

TTTGATTCTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCTGAT

U12 Branch Point Sequence:

ATGTGTTTGATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.9

0.45

1.1

41.2

Major BPS

82.5

0.81

0.8

71.4

36.6

Major PPT

83.3

0.75

0.8

77.6

36.5

Minor 5ss

33.2

-1.9

3.4

47.4

42.4

Minor BPS

55.6

0.26

1.8

72.25

39.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024591

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033334

34113458 - 34155164

41707