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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34149875_34150108_F

Intron Information:

Intron Rank:
129562
Intron Class:
major
Intron Phase:
Intron Coordinates:
34149875 - 34150108
Intron Length:
234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCCCT
5'SS Class:
major
3'SS Sequence:
CTTTTCACCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTCTTTTCACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
68.2
42.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
78.5
0.64
0.8
70.6
34.8
Minor 5ss
40.6
-1.1
3.1
58
46.1
Minor BPS
55.2
0.15
1.7
66.58
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019718
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032694
34132052 - 34151307
19256