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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34178905_34186455_R

Intron Information:

Intron Rank:
132065
Intron Class:
major
Intron Phase:
Intron Coordinates:
34178905 - 34186455
Intron Length:
7551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTATG
5'SS Class:
strong_major
3'SS Sequence:
TTCTAACATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GCTTCTTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
83.7
34.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74.3
0.55
1
71.1
38.7
Minor 5ss
39.4
-1.2
2.8
51.2
45.3
Minor BPS
63.7
0.51
1.6
76.14
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018300
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017181
34176969 - 34190180
13212