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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34204542_34208464_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34204542 - 34208464
Intron Length:
3923

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TGCCTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGACAT
U12 Branch Point Sequence:
GTAGCTTAGACA
Flanking Amino Acid:
PKKDVKNKQENHCEPCSERR
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
28.8
Major BPS
59.8
0.24
1.2
67
39.8
Major PPT
84.8
0.78
0.8
79.8
32.1
Minor 5ss
34.7
-1.7
3.2
43.7
38.1
Minor BPS
48.7
-0.1
1.8
59.23
40.9

Associated Gene:

Gene:
VEGFA
Ensembl Gene ID:
ENSAPLG00000025704
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034485
34201124 - 34222461
21338