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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34208298_34208464_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34208298 - 34208464
Intron Length:
167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
GAATCCGTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
ACACTCTGAATC
Flanking Amino Acid:
PKKDVKNKQEKWAQKPRSDG
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
28.8
Major BPS
69.8
0.49
1
61
37.5
Major PPT
65.7
0.35
1
54.6
45.2
Minor 5ss
34.7
-1.7
3.2
43.7
38.1
Minor BPS
51.1
0.01
1.4
55.69
36.3

Associated Gene:

Gene:
VEGFA
Ensembl Gene ID:
ENSAPLG00000025704
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021112
34201124 - 34222461
21338
ENSAPLT00000016960
34205145 - 34215964
10820
ENSAPLT00000033124
34206956 - 34222461
15506
ENSAPLT00000028270
34201124 - 34222461
21338