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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34208498_34208902_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34208498 - 34208902
Intron Length:
405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TCTTCCTCCACA
Flanking Amino Acid:
SFLQHSKCDCRPKKDVKNKQ
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.8
80.6
33.8
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
81.6
0.71
0.7
76.2
26
Minor 5ss
31.6
-2.1
3
39.4
46.1
Minor BPS
61.5
0.36
2
75.44
42.2

Associated Gene:

Gene:
VEGFA
Ensembl Gene ID:
ENSAPLG00000025704
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021112
34201124 - 34222461
21338
ENSAPLT00000042711
34201124 - 34222461
21338
ENSAPLT00000016960
34205145 - 34215964
10820
ENSAPLT00000034485
34201124 - 34222461
21338
ENSAPLT00000033124
34206956 - 34222461
15506
ENSAPLT00000028270
34201124 - 34222461
21338