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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34208980_34210589_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34208980 - 34210589
Intron Length:
1610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCATTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
GTTTCTTTCATT
Flanking Amino Acid:
PVDVYNVTMEIMRIKPHQSQ
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.9
33.4
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
85.9
0.81
0.8
77.9
35.2
Minor 5ss
25
-2.9
3.3
32.7
42.5
Minor BPS
68
0.65
1.7
84.22
37.1

Associated Gene:

Gene:
VEGFA
Ensembl Gene ID:
ENSAPLG00000025704
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021112
34201124 - 34222461
21338
ENSAPLT00000042711
34201124 - 34222461
21338
ENSAPLT00000016960
34205145 - 34215964
10820
ENSAPLT00000034485
34201124 - 34222461
21338
ENSAPLT00000033124
34206956 - 34222461
15506
ENSAPLT00000028270
34201124 - 34222461
21338