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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34210787_34215822_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34210787 - 34215822
Intron Length:
5036

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCCCTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
TTTGCATTAACT
Flanking Amino Acid:
LGDGERKPNEVIKFLEVYER
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
78.8
0.65
0.7
74
24.3
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
76.1
0.9
1.6
93.33
34.8

Associated Gene:

Gene:
VEGFA
Ensembl Gene ID:
ENSAPLG00000025704
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021112
34201124 - 34222461
21338
ENSAPLT00000042711
34201124 - 34222461
21338
ENSAPLT00000016960
34205145 - 34215964
10820
ENSAPLT00000034485
34201124 - 34222461
21338
ENSAPLT00000033124
34206956 - 34222461
15506
ENSAPLT00000028270
34201124 - 34222461
21338