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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34320521_34353471_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34320521 - 34353471
Intron Length:
32951

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGAAGA
5'SS Class:
major
3'SS Sequence:
TTTCTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTAATTAATT
Flanking Amino Acid:
KQYGYVYFGTGARG*
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
0.9
69.5
36.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
91
0.92
0.6
89
20
Minor 5ss
27.5
-2.6
2.7
28.4
38
Minor BPS
70.8
0.73
1.7
90.5
32.7

Associated Gene:

Gene:
RSPH9
Ensembl Gene ID:
ENSAPLG00000016326
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032894
34319312 - 34373114
53803