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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34332499_34332719_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34332499 - 34332719
Intron Length:
221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTCCG
5'SS Class:
major
3'SS Sequence:
TTTGTCTGTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTGTTTTCATT
Flanking Amino Acid:
APPPARALREVVEVTEGNTT
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
62.3
43.9
Major BPS
100
1.24
0.5
100
0
Major PPT
81.5
0.71
0.9
77.1
37.1
Minor 5ss
28.7
-2.4
2.7
25.5
36.2
Minor BPS
56.6
0.29
1.8
78.3
39.3

Associated Gene:

Gene:
MRPS18A
Ensembl Gene ID:
ENSAPLG00000016280
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016988
34332399 - 34351859
19461