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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34332752_34335738_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34332752 - 34335738
Intron Length:
2987

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTCTC
5'SS Class:
major
3'SS Sequence:
AATTTTTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
TATCCTTTGAAT
Flanking Amino Acid:
VEVTEGNTTTIEGKIIEDAA
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
70.3
40.5
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
77.2
0.61
0.8
70.2
40.4
Minor 5ss
41
-1
3
59.3
39
Minor BPS
64.9
0.55
1.4
78.84
36.8

Associated Gene:

Gene:
MRPS18A
Ensembl Gene ID:
ENSAPLG00000016280
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016988
34332399 - 34351859
19461