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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34343100_34351489_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34343100 - 34351489
Intron Length:
8390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATACT
5'SS Class:
strong_major
3'SS Sequence:
GTTGTTTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
GTTGTTTTGACA
Flanking Amino Acid:
GHIPKKPKLNRYLTRWSVRS
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
82.9
28.7
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
76
0.59
1
72.2
42.7
Minor 5ss
32.3
-2
2.8
43.2
43.8
Minor BPS
62.5
0.39
1.4
69.98
36.5

Associated Gene:

Gene:
MRPS18A
Ensembl Gene ID:
ENSAPLG00000016280
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016988
34332399 - 34351859
19461