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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34348038_34353471_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34348038 - 34353471
Intron Length:
5434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGAAGA
5'SS Class:
major
3'SS Sequence:
TCTGTTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACCCAT
U12 Branch Point Sequence:
TTGACTTGGATG
Flanking Amino Acid:
KQYGYVYFGTVGS*
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
0.9
69.5
36.5
Major BPS
64.5
0.36
1.2
72.7
34.4
Major PPT
85.1
0.79
0.8
76.9
37.3
Minor 5ss
27.5
-2.6
2.7
28.4
38
Minor BPS
49
-0.2
1.6
55.34
40.6

Associated Gene:

Gene:
RSPH9
Ensembl Gene ID:
ENSAPLG00000016326
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045811
34347027 - 34373114
26088