Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34353598_34370417_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

34353598 - 34370417

Intron Length:

16820

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAAACA

5'SS Class:

strong_major

3'SS Sequence:

TATTCTCCTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

TATTCTCCTACA

Flanking Amino Acid:

LDSLEHDIPPGSWTVQPEKG

Intron Amino Acid Position:

224

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.7

0.77

0.9

76.8

31.6

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

83.6

0.76

0.8

77.4

31.1

Minor 5ss

33.1

-1.9

2.9

41.4

44.7

Minor BPS

-0.2

2.1

65.56

40.7

Associated Gene:

Gene:

RSPH9

Ensembl Gene ID:

ENSAPLG00000016326

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044259

34338345 - 34373114

34770

ENSAPLT00000032894

34319312 - 34373114

53803

ENSAPLT00000045811

34347027 - 34373114

26088