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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34370565_34371147_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34370565 - 34371147
Intron Length:
583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTCC
5'SS Class:
strong_major
3'SS Sequence:
TGGCTGTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
ACTGTATTAACT
Flanking Amino Acid:
GSVHENRNFEGLSLTEAKKL
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
78.2
30.3
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
75.5
0.57
1
68.8
41.9
Minor 5ss
40.8
-1
2.8
53.7
43.5
Minor BPS
59.6
0.38
1.7
74.82
42.1

Associated Gene:

Gene:
RSPH9
Ensembl Gene ID:
ENSAPLG00000016326
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032894
34319312 - 34373114
53803
ENSAPLT00000017041
34369801 - 34373114
3314
ENSAPLT00000045811
34347027 - 34373114
26088
ENSAPLT00000044259
34338345 - 34373114
34770