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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34372743_34372884_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
34372743 - 34372884
Intron Length:
142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCCCCGG
5'SS Class:
weak_major
3'SS Sequence:
TTGTCGCCGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAGGGAT
U12 Branch Point Sequence:
GATGGGAGAGCC
Flanking Amino Acid:
DRAAPRSRLYSLDCVEWSLL
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.7
0.18
1.2
41.7
46.7
Major BPS
42.4
-0.4
1.5
34.8
43.8
Major PPT
67
0.38
1.1
62.4
39.7
Minor 5ss
36.3
-1.6
3.2
47.8
47.7
Minor BPS
29.2
-1.6
2.3
38.15
39.5

Associated Gene:

Gene:
RSPH9
Ensembl Gene ID:
ENSAPLG00000016326
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044259
34338345 - 34373114
34770
ENSAPLT00000032894
34319312 - 34373114
53803
ENSAPLT00000017041
34369801 - 34373114
3314
ENSAPLT00000045811
34347027 - 34373114
26088