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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34399533_34400885_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34399533 - 34400885
Intron Length:
1353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGATGC
5'SS Class:
major
3'SS Sequence:
CTCTTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAGAT
U12 Branch Point Sequence:
TTTTCTTTTTCT
Flanking Amino Acid:
MWQEVLPNAWESILSRIRS
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
0.9
64.7
36.1
Major BPS
59.6
0.24
1.1
55.4
40.4
Major PPT
85
0.79
0.6
84.6
23.3
Minor 5ss
33
-1.9
3
38.6
41
Minor BPS
48.1
-0
3.6
87.77
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016336
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025764
34398573 - 34409195
10623