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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34399533_34401760_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34399533 - 34401760
Intron Length:
2228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGATGC
5'SS Class:
major
3'SS Sequence:
TGTGCCTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TGTTATTGAATA
Flanking Amino Acid:
MWQEVLPNAWSFQYSQKNA
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
0.9
64.7
36.1
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
67.5
0.39
0.9
58.8
38.3
Minor 5ss
33
-1.9
3
38.6
41
Minor BPS
58.5
0.26
1.6
70.09
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016336
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017047
34399504 - 34409195
9692