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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34418042_34418558_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34418042 - 34418558
Intron Length:
517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGACC
5'SS Class:
strong_major
3'SS Sequence:
CTATTTCCTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTTTCTCTATTT
Flanking Amino Acid:
LVRKVPDNQQFLDLRVAVLG
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
73
34.7
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
78.7
0.64
0.8
74.2
30.7
Minor 5ss
32.1
-2
3.3
43.2
44.2
Minor BPS
60.6
0.41
1.9
84.33
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017749
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036071
34417988 - 34419792
1805