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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34427620_34428058_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34427620 - 34428058
Intron Length:
439

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTAGAT
U12 Branch Point Sequence:
TCGCTTGCAACT
Flanking Amino Acid:
ESRLIQDRNQNHRVAKQLMV
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
64
0.35
1.2
60.7
45.9
Major PPT
83.7
0.76
0.7
76.3
32.3
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
43.8
-0.3
2.1
60.42
43.8

Associated Gene:

Gene:
POLH
Ensembl Gene ID:
ENSAPLG00000001092
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001149
34426110 - 34433402
7293