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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34428125_34428569_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34428125 - 34428569
Intron Length:
445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTGTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTCAG
U12 Branch Point Sequence:
TGGGCCCAATCC
Flanking Amino Acid:
GKTALATQKEVQHWLLQLAL
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
71.3
34.5
Major BPS
49.4
-0
1.7
60.7
45.9
Major PPT
83
0.74
0.9
76.9
42.1
Minor 5ss
28.3
-2.5
3.5
37.3
47.4
Minor BPS
41
-0.7
2.2
51.39
45.5

Associated Gene:

Gene:
POLH
Ensembl Gene ID:
ENSAPLG00000001092
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001149
34426110 - 34433402
7293