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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34428694_34428980_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34428694 - 34428980
Intron Length:
287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGAGC
5'SS Class:
major
3'SS Sequence:
CTCTGGCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTTAC
U12 Branch Point Sequence:
CTGCCTTTACCT
Flanking Amino Acid:
ELQTHFGDKTGSWLYDLCRG
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
67.8
43.5
Major BPS
61.7
0.29
1.1
55
40.4
Major PPT
76.8
0.6
0.9
72.6
37.7
Minor 5ss
32.2
-2
3.1
34.8
41.4
Minor BPS
58.6
0.35
1.7
72.68
44.6

Associated Gene:

Gene:
POLH
Ensembl Gene ID:
ENSAPLG00000001092
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001149
34426110 - 34433402
7293