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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34429101_34430119_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34429101 - 34430119
Intron Length:
1019

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
GTCTCTGCTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
GGTGTTTCATTT
Flanking Amino Acid:
QLFSQMPVSNIRNLGGKLGA
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
80.9
31.3
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
71.3
0.48
0.9
65.7
36
Minor 5ss
37.8
-1.4
3.3
55.2
42.1
Minor BPS
43.7
-0.4
1.7
56.68
40.6

Associated Gene:

Gene:
POLH
Ensembl Gene ID:
ENSAPLG00000001092
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001149
34426110 - 34433402
7293