About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34430224_34432258_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34430224 - 34432258
Intron Length:
2035

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATGTG
5'SS Class:
major
3'SS Sequence:
CTCCACGTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
CTTGTAATAACA
Flanking Amino Acid:
RCSAGISHNKMLAKLACGLN
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
69.7
41.2
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
71.7
0.49
0.9
63.8
36.5
Minor 5ss
34.6
-1.8
3.5
48.8
47.4
Minor BPS
48.3
-0.1
2
64.78
41.6

Associated Gene:

Gene:
POLH
Ensembl Gene ID:
ENSAPLG00000001092
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001149
34426110 - 34433402
7293