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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34434293_34434919_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34434293 - 34434919
Intron Length:
627

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGGTG
5'SS Class:
major
3'SS Sequence:
CTCTTGTGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTCTTTCTAACT
Flanking Amino Acid:
FGLQILEHVVKFRWNNMPRL
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
1
70.6
39.9
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
68.4
0.42
1
64.6
40.3
Minor 5ss
34.5
-1.8
3.7
46.7
43.3
Minor BPS
66.4
0.59
1.6
83.74
37.5

Associated Gene:

Gene:
XPO5
Ensembl Gene ID:
ENSAPLG00000001469
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040854
34433661 - 34456945
23285
ENSAPLT00000002022
34433661 - 34456945
23285