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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34434993_34435553_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34434993 - 34435553
Intron Length:
561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
TCTCCTCTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTAAC
U12 Branch Point Sequence:
GCTTGTGTAACT
Flanking Amino Acid:
KNNVMGLISNGTQSILEEES
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1.3
78.8
35.5
Major BPS
56.8
0.17
1.4
61.4
43.2
Major PPT
81.3
0.7
0.7
76.3
25.6
Minor 5ss
38.4
-1.3
2.7
46.6
34.4
Minor BPS
48.7
-0
2.4
71.8
45.5

Associated Gene:

Gene:
XPO5
Ensembl Gene ID:
ENSAPLG00000001469
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040854
34433661 - 34456945
23285
ENSAPLT00000002022
34433661 - 34456945
23285