About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34436181_34437085_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
34436181 - 34437085
Intron Length:
905

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCGGC
5'SS Class:
major
3'SS Sequence:
TCTGATTGGCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TCTTTCTGATTG
Flanking Amino Acid:
QQNVNKYRRMVGAPQEQEAL
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
63.2
41.8
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
52.2
0.05
1.3
52.1
46
Minor 5ss
36.8
-1.5
3.4
46.9
44
Minor BPS
50.8
-0.1
1.8
59.31
43.2

Associated Gene:

Gene:
XPO5
Ensembl Gene ID:
ENSAPLG00000001469
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040854
34433661 - 34456945
23285