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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34438019_34438203_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34438019 - 34438203
Intron Length:
185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CCTCTGTTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
CGGTTCTGACTT
Flanking Amino Acid:
MKTDLAQEPKAQANCRVGIA
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.5
32.8
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
77.1
0.61
0.8
71.5
32.8
Minor 5ss
26.6
-2.7
3
31.8
42.6
Minor BPS
47.5
-0.1
1.7
60.5
43.7

Associated Gene:

Gene:
XPO5
Ensembl Gene ID:
ENSAPLG00000001469
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040854
34433661 - 34456945
23285
ENSAPLT00000002022
34433661 - 34456945
23285