Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_34445616_34446953_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

34445616 - 34446953

Intron Length:

1338

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTACGTAAA

5'SS Class:

strong_major

3'SS Sequence:

ATGTGTTTTCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACCAAAT

U12 Branch Point Sequence:

CGCTCTTCCACT

Flanking Amino Acid:

MCRDYPQLVLPNFEMLYNHV

Intron Amino Acid Position:

616

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.71

76.1

34.8

Major BPS

55.9

0.15

61.2

32.6

Major PPT

78.8

0.65

69.7

45.4

Minor 5ss

34.1

-1.8

2.9

38.7

41.6

Minor BPS

47.9

-0

64.22

46.4

Associated Gene:

Gene:

XPO5

Ensembl Gene ID:

ENSAPLG00000001469

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040854

34433661 - 34456945

23285

ENSAPLT00000002022

34433661 - 34456945

23285